The following tools are developed by the Bioinformatics Core.

 

Statistics Shiny apps

Interactive web applications for carrying out basic statistical tests.

 


MGA

MGA alignment summaryContaminant screen quality control tool for high-throughput sequencing data.

 

DiffBind

DiffBind Volcano PlotBioconductor tool for Differential Binding Analysis of ChIP-seq Data

 

 

BCAPE

Shiny web application and R processing scripts for the Breast Cancer PDTX Encyclopaedia (BCaPE).


Absolute copy number scaling

Shiny web application for estimating ploidy and cellularity from tumour copy number profiles.