The following tools are developed by the Bioinformatics Core.
R/Bioconductor package for differential binding analysis of ChIP-seq data.
R/Bioconductor package for identifying genomic regions with spurious high signals in ChIP-seq experiments.
R/Bioconductor package for checking the prognostic performance of a gene signature.
R package for analysis of survival data using a maximum penalized likelihood approach.
Interactive web applications for demonstrating the central limit theorem and carrying out basic statistical tests.
Shiny web application and R processing scripts for the Breast Cancer PDTX Encyclopaedia (BCaPE).
Java package providing a programmatic interface to the REST API for the Clarity LIMS.
Shiny web application for estimating ploidy and cellularity from tumour copy number profiles.
Variant calling pipeline for amplicon sequencing data.
R/Bioconductor package providing a toolkit for statistical analysis of qPLEX-RIME proteomics data.
Contaminant screen quality control tool for high-throughput sequencing data.
Shiny web application for exploring prostate cancer datasets.