The following tools are developed by the Bioinformatics Core.

Statistics Shiny apps

Interactive web applications for carrying out basic statistical tests.


MGA

Contaminant screen quality control tool for high-throughput sequencing data.

DiffBind

DiffBind Volcano PlotBioconductor tool for Differential Binding Analysis of ChIP-seq Data

 

 

BCAPE

Shiny web application and R processing scripts for the Breast Cancer PDTX Encyclopaedia (BCaPE).


Absolute copy number scaling

Shiny web application for estimating ploidy and cellularity from tumour copy number profiles.