The Brenton lab operates a reproducible research policy and where possible all analyses performed in the lab are encapsulated in an executable document which can dynamically regenerate all published results.
Publication repositories
- https://bitbucket.org/britroc/fixation Piskorz et al “Methanol-based fixation is superior to buffered formalin for next-generation sequencing of clinical cancer samples”
R packages
ABCEL – Absolute copy-number estimation from low coverage sequencing (coming soon)
- frenchFISH – A Poisson process model for estimating copy-number from fluorescent in situ hybridization of tissue sections (coming soon)
Standalone software
- MEDICC – Minimum Event Distance for Intra-tumour Copy number Comparisons https://bitbucket.org/rfs/medicc
