Authors:
AL Jacquin, DT Odom, M Lukk
Journal name: 
Bioinformatics
Abstract: 
CRISPR/Cas9 system requires short guide RNAs (sgRNAs) to direct genome modification. Most currently available tools for sgRNA design operate only with standard reference genomes, and are best suited for small-scale projects. To address these limitations, we developed Crisflash, a software tool for fast sgRNA design and potential off-target discovery, built for performance and flexibility. Crisflash can rapidly design CRISPR guides against any sequenced genome or genome sequences, and can optimize guide accuracy by incorporating user-supplied variant data. Crisflash is over an order of magnitude faster than comparable tools, even using a single CPU core, and efficiently and robustly scores the potential off-targeting of all possible candidate CRISPR guide oligonucleotides. Availability: https://github.com/crisflash. Supplementary information: Supplementary information is available at Bioinformatics online.
DOI: 
http://doi.org/10.1093/bioinformatics/btz019
Research group: 
Odom Group
E-pub date: 
31 Dec 2018
Users with this publication listed: 
Duncan Odom